PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69570

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 311aa MW: 35220.8 Da PI: 6.7867

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69570	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.6e-13	13	58	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l+ vk++G+++W++I ++ + Rt+k+c++rw + OMO69570 13 KGPWKAEEDEVLIYHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 58 79***********************8887799********87 PP
2	Myb_DNA-binding	42.7	1.3e-13	69	108	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eE+ +++ q+G++ W++Ia +++ gRt++++k++w OMO69570 69 KFTAEEERVVIELQGQFGNK-WAKIATYLP-GRTDNDVKNFW 108 79****************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MAGKRAEISQ IRKGPWKAEE DEVLIYHVKK YGPRDWSSIR SKGLLQRTGK SCRLRWVNKL 60 RPNLKNGCKF TAEEERVVIE LQGQFGNKWA KIATYLPGRT DNDVKNFWSS RQKRLARILQ 120 NSGTPSHSKP LKIKKEVPDF HDVSTLEAPE SCSSMAEESN PMGQSCSSYI ENSEGIKMEQ 180 LTDAKNPHLY TIDANIAQLE FLSRGKNPYA EAQPQIMFPQ IPQPQSYLTL SLESQDLLAK 240 FEDPYFSQVF ASMDVPELGC GHVGQPFLEP VRNRGLGPRE GTDNPVTPDT FFDDFPADMF 300 DHMEPLPSPS Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-75	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO69570