PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69600
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 207aa    MW: 22953.8 Da    PI: 10.0096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69600genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.8e-21108158255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g+++AeIrdp++ng   r++lg++ t+e+Aa a+++a+ k++g
  OMO69600 108 HYRGVRRRP-WGKFAAEIRDPKKNG--NRVWLGTYETPEDAALAYDQAAFKMRG 158
               7********.***********9997..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MWGEINNSMG SDFALLESIR THLLADDFEA SLGLTTAFHG NDNAPSTVHP SFTSLLLGET  60
QNWSCQSEKP DLVLTNAVKA EPADNHELLA REEARPKPQA PPAPKMEHYR GVRRRPWGKF  120
AAEIRDPKKN GNRVWLGTYE TPEDAALAYD QAAFKMRGSK AKLNFPHLIG SGNLVIPIRV  180
SHKRRSPEPS SSTSSISSNN SSPKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-41ERF family protein