PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69601
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 267aa    MW: 29457.9 Da    PI: 4.7502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69601genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20113163255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr+++ +g ++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  OMO69601 113 HYRGVRRRP-WGTYAAEIRDPKKNG--ARIWLGTYETPEDAALAYDKAAFKMRG 163
               6********.***********9998..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MYGESCSTSS EFDLTLLDSI SQYLLEDDLE VLPPASSFMN NTVKTELSFD QTYDNNPINV  60
DQWITFDQLF DPAADQTMTT VVNVDPVPSS AMAASVTKTA AKPRVAPPAN KVHYRGVRRR  120
PWGTYAAEIR DPKKNGARIW LGTYETPEDA ALAYDKAAFK MRGSKAKLNF PHLIGSGQVE  180
PVRVTNNKRR SPEPSTSSSS WSSSDQSASS SPSSPAMSDE GITTPKSKRR LCEINNSAPV  240
VIPELGTEFE IDFNQLIPTD FWQTVFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-46ERF family protein