PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69602
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 272aa    MW: 30703.1 Da    PI: 6.3774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69602genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20127177255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               ++kGVr+++ +g+++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ k++g
  OMO69602 127 HFKGVRRRP-WGKYAAEIRDPKRNG--ARIWLGTYETPEDAALAYDRAAFKMRG 177
               69*******.**********98776..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MEIISSSASE FNILESFQRY LLDDSDEFQA IRTTTSSNCA PSYNRSSSFS HVFLNETWGD  60
LPLRVDDSED MLVYSALRDA ANSGWSPSSN EVDLSTLFQT VEEESNKTKE EVNKVERKAD  120
VPPKGLHFKG VRRRPWGKYA AEIRDPKRNG ARIWLGTYET PEDAALAYDR AAFKMRGSKA  180
KLNFPHLIGS TALEPVRVGA RRRSHESSTS TTSYGMSTCS QKLNKRRKTE SNSEEATATA  240
MLQQEIASLD ATEVFQMSHW TFGDQFNFFG FK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-65ERF family protein