PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69626

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 206aa MW: 23305.1 Da PI: 9.2273

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69626	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.7	1.6e-25	140	186	1	47
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv 47 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++ OMO69626 140 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRM 186 59****************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MEGERGVGNY ELQVSFSSTP QAIHEMGFVQ FDQENQAAVM SFLAPAAAAA QPPSHQISQP 60 LNTSSISNTT NSTAMGFSHN DQVGTLDPKA VNDENCASNA NDGNNSWWRS SASDKNKVKV 120 RRKLREPRFC FQTRSDVDVL DDGYKWRKYG QKVVKNSLHP RSYYRCTHNN CRVKKRVERL 180 SEDCRMDMSI LQKKPDDLKP FVVKVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	125	KVRRKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-56	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO69626