PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69764
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 322aa    MW: 35152.1 Da    PI: 9.6342
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69764genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.5e-32152208158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                dep+YVNaKQy++Il+RRq Rak+e ekk+ +k rkpylheSRh+hA+rR+Rg+gGrF
   OMO69764 152 DEPVYVNAKQYHGILRRRQIRAKAELEKKV-IKVRKPYLHESRHQHAMRRARGCGGRF 208
                79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MPAKAGNGDG QLDHDHGARS MLHSTVYSEP WWKGVGTNQL ADASKASSTE QLNGSVANGA  60
VLSHAHGSLG NGDGRSGQDR QNLKHVPSAL AEHLEPNSQM ELVGHSIVLT SYHYTDPQYG  120
GILTSYGPQT MVSPHLYGMH HARMPLPLQM EDEPVYVNAK QYHGILRRRQ IRAKAELEKK  180
VIKVRKPYLH ESRHQHAMRR ARGCGGRFLN TKKLDQDKSS PTSETGMDSD SNLSTKHDHL  240
SGSERLSANA TSKFKSLYDQ QEGNGSLVMG FQKAEHLAKG NTNGHGLSSS KDAVEGNYFG  300
QQRDVVLPLP GNKAQHGASL NK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.27e-47NF-YA family protein