PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69787
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 337aa    MW: 37455.4 Da    PI: 8.0932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69787genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033177196120
               EEETTTTEEESSHHHHHHHH CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
               ++Cp C k+F+r  nL+ H+
  OMO69787 177 FSCPVCCKTFNRYNNLQMHM 196
               89*****************9 PP
2zf-C2H2120.00064263283323
               ETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
               C +C+k F  k + ++H +++
  OMO69787 263 CRKCDKAFAVKGDWRTHEKNC 283
               *****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MTDPACCNLF SGCFNLMPLN PHYTCSLATN SNHPNPCSLP HPNTIIFNKS SNIQGHTCSP  60
PRKEALPLIN YLSPARQDET EPSGSSMEDI IDHRNTNREA KLDEEAAVTV ALHIGLPSPS  120
SDPIRLSPSP SPPPPPPPPP SSVDVTDKLG ENGSAVLSKG QYWIPTPTQI LVGPTQFSCP  180
VCCKTFNRYN NLQMHMWGHG SQYRKGPESL RGSQPTAMLR LPCYCCAAGC KHNIDHPRAR  240
PLKDFRTLQT HYKRKHGIKP FLCRKCDKAF AVKGDWRTHE KNCGKIWYCI CGSDFKHKRS  300
LKDHIKAFGS GHATFPNPSH SFSQEEDDDP TSEFDLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-111C2H2 family protein