PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69807

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 754aa MW: 83031.3 Da PI: 8.4948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69807	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.2e-11	673	718	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l P+ +k + a++L +AveYIk+Lq OMO69807 673 SIAERVRRTRISERMRKLQGLFPNM----DKQTNTADMLDMAVEYIKDLQ 718 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence
MEKGVPSSLF VNDGSFMERF KQLQQQKDEK EKAAAALEES KPPKIVKGSS APKPAIALNK 60 LTMEFKANDA RKTSQASSGG KLAFSLKQKS KLVSPPVKLA TDEEEEDQDT GKLPDDIPVK 120 RQKLGQAIAS EQASKQVDVA SPSASDPTVK KFADNLANFV AKHGRQIEHI TRQKNPGDTP 180 FKFLFDESCS DYKYYEYRLA EEEKALSHNK ESQTPQHGDA SISASKSTSS SVRSLHQSGY 240 QMPASALYEN NEEPRSSMAS VGRAGPSSAP TGADPIAMME YYMKKAAQEE KMRPPKQSKD 300 EMPPPPSIQA ASLKKGHHMG DYIPPEELEK FLAACNDAAA QKAARETAEK AKIQSDNVGH 360 KLLSKMGWKE GEGLGSSKNG ISDPIMAGDV KMNNLGVGAH HPGEVTAEDD IYEQYKKRMM 420 LGYRYRPNPL ESSKDMSVSY SSSFRFPDGE LRKKHEFKDS SHYVQQKQQH NSGLIRFRSA 480 PSSFLDDTDS GPGFEDYDKF PPSSPEMETL FILSCNGSGS DNMQQHGHGE KAVLKREEAQ 540 SVPQRNGCSE MMMYQRPVNG LANDTNIVTV ANGVVGSSVC HSSSCGLENS MQAKLGNENG 600 SNLVRQSSSP AEFFSNVLGL DHGFNVAQKD CGDRLSLAKT RAEMAVVEKL WQFQGSVPCK 660 IRAKRGCATH PRSIAERVRR TRISERMRKL QGLFPNMDKQ TNTADMLDMA VEYIKDLQKQ 720 VKKLTDTKAS RTCTCTCSAQ VNTNTNTNQI FVPN

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence

MEKGVPSSLF VNDGSFMERF KQLQQQKDEK EKAAAALEES KPPKIVKGSS APKPAIALNK  60
LTMEFKANDA RKTSQASSGG KLAFSLKQKS KLVSPPVKLA TDEEEEDQDT GKLPDDIPVK  120
RQKLGQAIAS EQASKQVDVA SPSASDPTVK KFADNLANFV AKHGRQIEHI TRQKNPGDTP  180
FKFLFDESCS DYKYYEYRLA EEEKALSHNK ESQTPQHGDA SISASKSTSS SVRSLHQSGY  240
QMPASALYEN NEEPRSSMAS VGRAGPSSAP TGADPIAMME YYMKKAAQEE KMRPPKQSKD  300
EMPPPPSIQA ASLKKGHHMG DYIPPEELEK FLAACNDAAA QKAARETAEK AKIQSDNVGH  360
KLLSKMGWKE GEGLGSSKNG ISDPIMAGDV KMNNLGVGAH HPGEVTAEDD IYEQYKKRMM  420
LGYRYRPNPL ESSKDMSVSY SSSFRFPDGE LRKKHEFKDS SHYVQQKQQH NSGLIRFRSA  480
PSSFLDDTDS GPGFEDYDKF PPSSPEMETL FILSCNGSGS DNMQQHGHGE KAVLKREEAQ  540
SVPQRNGCSE MMMYQRPVNG LANDTNIVTV ANGVVGSSVC HSSSCGLENS MQAKLGNENG  600
SNLVRQSSSP AEFFSNVLGL DHGFNVAQKD CGDRLSLAKT RAEMAVVEKL WQFQGSVPCK  660
IRAKRGCATH PRSIAERVRR TRISERMRKL QGLFPNMDKQ TNTADMLDMA VEYIKDLQKQ  720
VKKLTDTKAS RTCTCTCSAQ VNTNTNTNQI FVPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	6e-42	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO69807