PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69866

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 528aa MW: 59979.9 Da PI: 5.4848

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69866	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.5e-18	423	515	4	92
E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 v+ p++ ++ rl++p+kf++e++ +k +k+++l+ ++g++W+v +++ +++++ + +k+W++F+++n+L +gD++vF+l+++ +e+ OMO69866 423 VMQPAYLGRGrWRLYIPNKFVKENMDVK--KKKVILQVSDGKTWDVDFSVlsvpSGQQKPQISGKNWRKFAEQNKLHVGDVCVFELVDHtNEGDS 515 33344444333579********9885..558***********988865444444999********************9976566655 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MNLVAIDKTK GISLSWEVVE VSFEMLEEEL PCDLFALSPF TKLNSPSFNF ASYSWIHRCL 60 YAFILSATPA AAAEPPPSPP PPPGGAPPLP RLPISILKPN ALEKYWTLNS SLPRPWGLRF 120 NSHGIVFIFD PSATEIEYGN SNQEAEEEEE EEEEEEEEEE ENCETEHGKP NKENDQEEEI 180 NSADRLNETN QEAGDSQSVF EGLNHINQEE ESDHQDYDSV EILNQTPPSD SKSTENKCLR 240 RSKRRKTASD KNKKVPEDVS DNDSVEILNQ TPRKSKMGKK RGVNASAEML RTEKKCCLRQ 300 KRKKTTSDKM MKETRGVQIL PLFKKPQQTI PHLLLKCNPG YKLILPIDFI EYLPNKTGIV 360 TLCTMDDIYR INPDSNCSSF MGRNILKCNR SCCSSLPLTS HEKATALLRA KDFDSDYPSF 420 KVVMQPAYLG RGRWRLYIPN KFVKENMDVK KKKVILQVSD GKTWDVDFSV LSVPSGQQKP 480 QISGKNWRKF AEQNKLHVGD VCVFELVDHT NEGDSIFKVS IFYSSKVI

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MNLVAIDKTK GISLSWEVVE VSFEMLEEEL PCDLFALSPF TKLNSPSFNF ASYSWIHRCL  60
YAFILSATPA AAAEPPPSPP PPPGGAPPLP RLPISILKPN ALEKYWTLNS SLPRPWGLRF  120
NSHGIVFIFD PSATEIEYGN SNQEAEEEEE EEEEEEEEEE ENCETEHGKP NKENDQEEEI  180
NSADRLNETN QEAGDSQSVF EGLNHINQEE ESDHQDYDSV EILNQTPPSD SKSTENKCLR  240
RSKRRKTASD KNKKVPEDVS DNDSVEILNQ TPRKSKMGKK RGVNASAEML RTEKKCCLRQ  300
KRKKTTSDKM MKETRGVQIL PLFKKPQQTI PHLLLKCNPG YKLILPIDFI EYLPNKTGIV  360
TLCTMDDIYR INPDSNCSSF MGRNILKCNR SCCSSLPLTS HEKATALLRA KDFDSDYPSF  420
KVVMQPAYLG RGRWRLYIPN KFVKENMDVK KKKVILQVSD GKTWDVDFSV LSVPSGQQKP  480
QISGKNWRKF AEQNKLHVGD VCVFELVDHT NEGDSIFKVS IFYSSKVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-10	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO69866