PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69988
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Nin-like
Protein Properties Length: 200aa    MW: 23342.1 Da    PI: 9.3352
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69988genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.63.7e-264090252
    RWP-RK  2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
              +k +s +++s+yF++pi++AAkeL+v+lT+LK++CR+ GI+RWP+Rk+ sl
  OMO69988 40 TKMLSRKVISQYFYMPITQAAKELNVGLTLLKKRCREVGIRRWPRRKLMSL 90
              68899*******************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MTSNLQGKNI EGIKGNEVGI IKEEKDIILS SRENQKCNGT KMLSRKVISQ YFYMPITQAA  60
KELNVGLTLL KKRCREVGIR RWPRRKLMSL QTLINNVQEL QKEEGEESEI KLKEALIVLE  120
KEKKMLEEMP DMQLEDNTKR LRQACFKANY KKRKLMTMME ESNSRERLGL GKPYGMENEE  180
EEEIKYLLST DSNSSTNFII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-40Nin-like family protein