PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70343
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family TCP
Protein Properties Length: 492aa    MW: 53021.4 Da    PI: 7.3007
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70343genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.34.5e-37932612135
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ssssasec.. 73 
                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                            ++    +  
  OMO70343  93 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLnssfpdtpkqlsdekrasgggtttneqAFD----Sae 189
               689*************************************************************999999999999999999888765555222....122 PP

       TCP  74 ..........eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                         +++++ss++++     + +++a+s++s++s++s l+l++    e r kar+rarer ++++ ++++
  OMO70343 190 veldgdpnnyQQNNQSSQQQH----LSLSKSACSSNSETSKNSGLSLSRseirENRVKARERARERAAKDKEKEHD 261
               233332111122222222222....444444455666666666666665434488899999999988887777655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MEVEEIQTQA CKFSRVGNGR NDSSKIGQKG VSENYPDDEE DGELMVKRGG GGGGGGGGGG  60
GGGDGGGGGV IDTTNRLRGW HHSSRIIRVS RASGGKDRHS KVWTSKGLRD RRVRLSVTTA  120
IQFYDLQDRL GYDQPSKAVE WLIKAASDAI AELPSLNSSF PDTPKQLSDE KRASGGGTTT  180
NEQAFDSAEV ELDGDPNNYQ QNNQSSQQQH LSLSKSACSS NSETSKNSGL SLSRSEIREN  240
RVKARERARE RAAKDKEKEH DHQNVNPISQ NSSFTELLTG GIGNNNGGSP QNPNGEPDFF  300
NKSTNSAAAT ARQWPNTPMD YFASGLLGPS SSSSSRSHHN HSSGFPGQIQ LGNSLPQALS  360
IPPFNVSGDQ SHHHHHHQEL QHFSFVPNPD HLIPVTTQPG PGCDYNLNFT ISSGLAGFNR  420
GTLQSNSPSS FLPHHHLQRF SSIESSPSPF YIGTPPVENH HQFPAGFHDR GLQLCYGDGT  480
SRSSDHKGKG KN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.13e-66TCP family protein