PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70530
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 396aa    MW: 44431.1 Da    PI: 4.5082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70530genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-19127176255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  OMO70530 127 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 176
               69*******.**********954...4************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MCGGAIISDF IPPTTRSSRR LTADFLWPDL SKSGSKKKSG KRYSKPVIDL DDDFEADFQE  60
FKDEESDVDF DDVDVDDVLA DIKPFAFSAT KKSDSAASRV YEGSNSVKAV EFNGQAEKSA  120
KRKRKNQYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDAE ARRIRGKKAK  180
VNFPDEAPRT SPKRAAKANS QKPISRSRPV QPNLNQNFNY VNKQEQEYYD TMGFVEEKPL  240
MDQFAYMDPV PASADVGLKP SVQSENAQLY FNSDEGSNSL DCSDFGWGEQ GSKTPEISSV  300
LEASIEVDDF LEDAYPSKKL KSNSDNVMPA EDNSAKSLSD ELLAMDNQMK YFQMPYEGSW  360
DASIDAFLNG DATQDSVNPM DLWSFDDFPS MEGAVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.35e-91ERF family protein