PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70533
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 170aa    MW: 19050 Da    PI: 4.1711
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70533genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-202873348
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               e++ + qv f kRr+g++KKAeE+S+LC+ae+avi +s+tg++y+
  OMO70533 28 LEENNKSQVAFYKRRTGLFKKAEEISTLCGAEIAVIALSKTGRVYT 73
              6788899**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MEDAESNPPD AREKTKSRGR QRIEIKKLEE NNKSQVAFYK RRTGLFKKAE EISTLCGAEI  60
AVIALSKTGR VYTSNNAEAV VDRFLGESSD HGDIVNDEEI DEEEQDSGGG FSLDQTEEDL  120
SLIELLDYGM ALEDLRDTAA TRLEEINIMN SGSLLQWVTD QDVKKAEFLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.18e-20M-type_MADS family protein