PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70606
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 381aa    MW: 43253.4 Da    PI: 8.8239
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70606genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-05133156123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               y C+ Cg+ F +++ L++H +  H
  OMO70606 133 YLCGVCGRKFYTNEKLVNHFKQiH 156
               56*****************98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MLQKFPNIIT SIQSTRTKTL IPCISISRYC HFKTKLDSDS LNHTSALASK PAQTTVAVFW  60
DLDNKPPNSF PPYEAAVKLK TAASSFGVVG SMVAYANHHA FSYVPKVVRE QRRERKYLNQ  120
LERKGVIKSV EPYLCGVCGR KFYTNEKLVN HFKQIHEREH QKRLNQIESA RGGRRVKLVG  180
RYAMKMEKYK SAARVVLTPK VGYGLADELK RAGFWVGAVS NKPQAADVAL RYHMVDVMDK  240
RKAECLVLVS DDSDFVDVLK EAKLRCLKTV VVGDVDNGAL KRVADAGFSW MEILRGKAKK  300
EAVSVVGKWK DRDILKRLEW TYNPEVERKS CADEDMFDDE SEDLDFDSTD DGNTADCMHK  360
EDTGEWWELE SDSDVISSHS R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-138C2H2 family protein