PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70607
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YA
Protein Properties Length: 287aa    MW: 31585.3 Da    PI: 9.191
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70607genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.96e-32133189158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                dep+YVNaKQy++Il+RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg+gGrF
   OMO70607 133 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-IKVRKPYLHESRHLHALKRARGNGGRF 189
                79****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MGVLPQHFHN TKQLSFQFQD QDSSSTQSTG QSYPEVASAG DNSLYGKSLL SASSGGNESH  60
GKLVGDHAKL ASSMGTQDYV FPPSQAHIPL HYAEPYFGGV MAAAYGPQAM IHHPQMMAML  120
PARVPLPLDL TEDEPIYVNA KQYRAILRRR QYRAKLEAQN KLIKVRKPYL HESRHLHALK  180
RARGNGGRFL NSKKLQESNC VPTSHELDTS RSPQLHLSST NPRSGVHRLE NYKDAASTTS  240
CSDVTSASNS DEMYQQPDFR FSGYPSQIGG TMPLHGGGNL HHLSGLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-76NF-YA family protein