PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70619

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 660aa MW: 72167 Da PI: 7.6267

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70619	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.6e-09	546	594	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l OMO70619 546 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 594 7**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MEIVVEVEVS NEGKFDETGL EKSNSAISSP KHVADPVVYK LVRVEGDGRL VPATDDELME 60 VEGLLENENR ETHIIADTGQ ALGSISNEVS SSGMPQLESS EGLSQSENTE ADAGKLSARL 120 EYIEEMLHKV KHEERLRLAC RSPDHSSAYM NVDSHCSKQH DKLPGIDEKL QSQIHLQEMA 180 PCGTQSLSDN PVTQSGSVGE RSKPLDEPIE GGSSTSAGCT SSKPDFSKLK GEVCLDNLSI 240 KELHEVFKAT FGRDTTVKDK QWLKRRIAMG LTNSCDVSTT TFVIKDNKLV KKGNEDSCNN 300 MNGASSKRHL TVGVENCQDL LNSHSSQIDE HRITAGLGLG KDGLENNYAS EDLAAEQRAA 360 KRVRKPTKRY IEELEADSKE SSGRLISPAK NIGIRPLGSK SHDRPATNSS LDGRTVITRL 420 DSLGGSGIQI PCVYRVRRSR PRKNVMALLR FHHSGMGMTA TFVKKGLDEH SSQMDSSSGN 480 KDLETRSTPE PAPQQSVGEL KKERPSTELG QTMGLQRVDP PGDSSDDNVA TVPTAKGGTR 540 RKHHRAWTLS EVMKLVEGVS KYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKASFAQ 600 TPMDKGVNSR KHPSMPIPAA ILLRVRELAE MQAQVPPNLS ASKQAACGGR SVNETKSGYL

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MEIVVEVEVS NEGKFDETGL EKSNSAISSP KHVADPVVYK LVRVEGDGRL VPATDDELME  60
VEGLLENENR ETHIIADTGQ ALGSISNEVS SSGMPQLESS EGLSQSENTE ADAGKLSARL  120
EYIEEMLHKV KHEERLRLAC RSPDHSSAYM NVDSHCSKQH DKLPGIDEKL QSQIHLQEMA  180
PCGTQSLSDN PVTQSGSVGE RSKPLDEPIE GGSSTSAGCT SSKPDFSKLK GEVCLDNLSI  240
KELHEVFKAT FGRDTTVKDK QWLKRRIAMG LTNSCDVSTT TFVIKDNKLV KKGNEDSCNN  300
MNGASSKRHL TVGVENCQDL LNSHSSQIDE HRITAGLGLG KDGLENNYAS EDLAAEQRAA  360
KRVRKPTKRY IEELEADSKE SSGRLISPAK NIGIRPLGSK SHDRPATNSS LDGRTVITRL  420
DSLGGSGIQI PCVYRVRRSR PRKNVMALLR FHHSGMGMTA TFVKKGLDEH SSQMDSSSGN  480
KDLETRSTPE PAPQQSVGEL KKERPSTELG QTMGLQRVDP PGDSSDDNVA TVPTAKGGTR  540
RKHHRAWTLS EVMKLVEGVS KYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKASFAQ  600
TPMDKGVNSR KHPSMPIPAA ILLRVRELAE MQAQVPPNLS ASKQAACGGR SVNETKSGYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	437	443	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-142	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO70619