PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70647

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRF

Protein Properties

Length: 365aa MW: 41023.1 Da PI: 8.6769

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70647	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.7e-25	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgrsrsrk++e OMO70647 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRSRSRKQVE 119 79***************************************987 PP
2	QLQ	64.2	3.4e-22	10	45	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT++Q+q+L++Q+l+yKy+++++P+PpeL++ ++ OMO70647 10 SPFTPTQWQELEHQALIYKYMVSGVPIPPELIFSVK 45 89******************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MITTAARNRS PFTPTQWQEL EHQALIYKYM VSGVPIPPEL IFSVKRSLDS SLASRLFPHQ 60 PIGWGCFQVG FGRKADPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RSRSRKQVEL 120 ITTNSSSSSS SSSTTTTTIA VPSIINRSNL SMNSTSSLSS NSSFSFSPLS SSEIYTHNQN 180 PNNPFLYSHN SSTSPHHFLD SATSVSYNNS QPDKDYRYVQ GTKEGVLDIE RSFFPEASGS 240 STVRIVADSF NQPLTAALSS YKSYPNHQSE YQKQEQDEEQ QQHCFVLGTD IKLARPIKLQ 300 KDHHHHNHNE TQKPVHQFFG DNWTPRNNTS TTTDSWLDLA SNSGVHSGKI QIVDEGLSNL 360 NNGSL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MITTAARNRS PFTPTQWQEL EHQALIYKYM VSGVPIPPEL IFSVKRSLDS SLASRLFPHQ  60
PIGWGCFQVG FGRKADPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RSRSRKQVEL  120
ITTNSSSSSS SSSTTTTTIA VPSIINRSNL SMNSTSSLSS NSSFSFSPLS SSEIYTHNQN  180
PNNPFLYSHN SSTSPHHFLD SATSVSYNNS QPDKDYRYVQ GTKEGVLDIE RSFFPEASGS  240
STVRIVADSF NQPLTAALSS YKSYPNHQSE YQKQEQDEEQ QQHCFVLGTD IKLARPIKLQ  300
KDHHHHNHNE TQKPVHQFFG DNWTPRNNTS TTTDSWLDLA SNSGVHSGKI QIVDEGLSNL  360
NNGSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-68	GRF family protein

Link Out ? help Back to Top
Ensembl	OMO70647