PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70747

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 360aa MW: 40055 Da PI: 6.712

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70747	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl OMO70747 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.4	2.2e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ OMO70747 67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD 120 VPALASFADH VHNSTPPEET FISLNGNPNL LLTAQQQDQL FLNSNPILQS FGHHAAADFK 180 PNPNGYNIDN LVHPHNNFPT PIFPSNTSSS SFDPTWPPLP TFNVPQEDVQ IFSNEVVQNF 240 INDHKLMNQT NPYDQHPLMA PPKFCEILEG CNMPPQTSGV SVSLVDNMDP VVSRLSSCFP 300 AISAVSNFPH EMHVPTSQME YIDNIITSQL PSSSSSSSLS ALSNGQFVAN PNLPSSSWDP

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISHD  120
VPALASFADH VHNSTPPEET FISLNGNPNL LLTAQQQDQL FLNSNPILQS FGHHAAADFK  180
PNPNGYNIDN LVHPHNNFPT PIFPSNTSSS SFDPTWPPLP TFNVPQEDVQ IFSNEVVQNF  240
INDHKLMNQT NPYDQHPLMA PPKFCEILEG CNMPPQTSGV SVSLVDNMDP VVSRLSSCFP  300
AISAVSNFPH EMHVPTSQME YIDNIITSQL PSSSSSSSLS ALSNGQFVAN PNLPSSSWDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-81	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO70747