PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70760
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 192aa    MW: 21226.5 Da    PI: 4.4333
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70760genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26070.82.9e-2222119195
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
               +CaaCk+ + +C +dC++a+yfp++ + ++ nv   FGa  +l+ll++l +++r    +am+sl++e+++r+  P  Ga+g+ ++ ++ ++ +k+ ++
  OMO70760  22 PCAACKHNGWRCGADCFFAEYFPSDCETQYLNVDNRFGAWGMLNLLNELTPTRRvdvGIAMHSLIFESNCRVVSPSTGATGLNMAARSLMRDAKTAAE 119
               7****************************************************9666679**********************9998887777766554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MAGDGKECEE KIGADGDHNM KPCAACKHNG WRCGADCFFA EYFPSDCETQ YLNVDNRFGA  60
WGMLNLLNEL TPTRRVDVGI AMHSLIFESN CRVVSPSTGA TGLNMAARSL MRDAKTAAEI  120
VSACNEIAKY SEEIARFRQN QHKEQLNHGS QTGTVSFDDI IRGRGIHFEE DPLPSDLEDA  180
ETDDDVLNAP DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-16LBD family protein