PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70787

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 588aa MW: 63725.3 Da PI: 8.6803

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70787	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OMO70787 82 FVCEICNKGFQRDQNLQLHRRGH 104 89*******************88 PP
2	zf-C2H2	13.1	0.00028	158	180	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ OMO70787 158 WKCEKCSKRYAVQSDWKAHSKTC 180 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MSNLTSASGE ASVSSGNRTE AGSNYPPPHH HHQQQYFSAT TNHPPPTQTQ PAKKKRNLPG 60 NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK 120 KVYVCPEASC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC 180 GTREYRCDCG TLFSRRDSFI THRAFCDALA EESAKAITGG VNVNPVLLPS SASASHINLQ 240 IPQQIQFNPQ EIQIQPPFSL KKEQQSFSIP PWLATQPMLG PGPGPPVAHP QPLDLSSSTT 300 SASIFSTRLD HHHHHHQEFS QTLDVHDHQN PNSTTTLGVG PTTLHNSYNH PTSVPSPHMS 360 ATALLQKAAQ MGATMSTTTK TGSSSAPLNR PHQQTHVSAD SSGSNNNNNN TTAGNFGLNL 420 SSREEELAIG TTTGSNSTTS FLHGLASFGA GNHKTTTSSS AAAANAGAPP SLFQDMMNSF 480 SSASGFDATS FDDDAFGAIL NSKKGDHHGS GSFINESMSF SSKTTTRNDR DCAGNGGQGE 540 GLTRDFLGLR AFSHNDILNM AGLSNCMNTS QSHEQRNVDD QSQKQWQG

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MSNLTSASGE ASVSSGNRTE AGSNYPPPHH HHQQQYFSAT TNHPPPTQTQ PAKKKRNLPG  60
NPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK  120
KVYVCPEASC VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC  180
GTREYRCDCG TLFSRRDSFI THRAFCDALA EESAKAITGG VNVNPVLLPS SASASHINLQ  240
IPQQIQFNPQ EIQIQPPFSL KKEQQSFSIP PWLATQPMLG PGPGPPVAHP QPLDLSSSTT  300
SASIFSTRLD HHHHHHQEFS QTLDVHDHQN PNSTTTLGVG PTTLHNSYNH PTSVPSPHMS  360
ATALLQKAAQ MGATMSTTTK TGSSSAPLNR PHQQTHVSAD SSGSNNNNNN TTAGNFGLNL  420
SSREEELAIG TTTGSNSTTS FLHGLASFGA GNHKTTTSSS AAAANAGAPP SLFQDMMNSF  480
SSASGFDATS FDDDAFGAIL NSKKGDHHGS GSFINESMSF SSKTTTRNDR DCAGNGGQGE  540
GLTRDFLGLR AFSHNDILNM AGLSNCMNTS QSHEQRNVDD QSQKQWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	121	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO70787