PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO70791
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 167aa    MW: 18549 Da    PI: 6.4958
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO70791genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26062.69.8e-201192179
    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...edamsslvyeAearardPvyGavgv 79
              +CaaCk+ + +C +dC++a+yfp++ + ++ nvh   Gas +l +lk++ + +r    ++m+++++e ++   dP +Ga g+
  OMO70791 11 PCAACKHNGWRCGADCFFAEYFPSDCETQYLNVHNRLGASGMLDVLKKVTPARRvdvGIIMHTIIFECNCLDVDPLQGASGL 92
              7***************************************************99555678*******************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MAGDGDHIMK PCAACKHNGW RCGADCFFAE YFPSDCETQY LNVHNRLGAS GMLDVLKKVT  60
PARRVDVGII MHTIIFECNC LDVDPLQGAS GLDEAFRNLR TEMTAAGIVS ACNEIAKYSE  120
EIARFRQNKH KEQLNHGAQT GTVSFDDIIQ GRGIPNFEEP ATKRQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-17LBD family protein