PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO70913

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 430aa MW: 47195.6 Da PI: 6.0048

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO70913	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	5.9e-08	332	372	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L OMO70913 332 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 372 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MDGLGWNGSE VMWNSQRNDM EDSFLIMSNS NSSIYGGKMD LPEDIFNPIQ ELQKVNADSF 60 PASNTNMLQC QVLKSANWGN ALTQEMWPSS SLMNRVYGSQ VINGGATTAA AGSLESLDCL 120 LSATNSNTDT SVEDDGISMI FSDCKKLWNF AASSSAVSSG ESENNGSNTG SKDFNYCQVN 180 ELDETVSQSS SEYRCISNGK PVSQATKPSS SSKRGINDQS EFKVGLNSGY FNLLQTDTSA 240 TEGGFRLIPE NPPKAKKARS EKRPCSSNIN FQQPSSSVSS SIEEPDPEAI AQMKEMIYRA 300 AAFRPVNLGL EIVEKPKRKN VRISTDPQTV AARQRRERIS ERIRVLQRLV PGGSKMDTAS 360 MLDEAANYLK FLRSQVKALE NLGHNKLDPM SCPPPTTNLP NFSSLPFNHS LPMQTHFPLL 420 NPNHIHHPQS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MDGLGWNGSE VMWNSQRNDM EDSFLIMSNS NSSIYGGKMD LPEDIFNPIQ ELQKVNADSF  60
PASNTNMLQC QVLKSANWGN ALTQEMWPSS SLMNRVYGSQ VINGGATTAA AGSLESLDCL  120
LSATNSNTDT SVEDDGISMI FSDCKKLWNF AASSSAVSSG ESENNGSNTG SKDFNYCQVN  180
ELDETVSQSS SEYRCISNGK PVSQATKPSS SSKRGINDQS EFKVGLNSGY FNLLQTDTSA  240
TEGGFRLIPE NPPKAKKARS EKRPCSSNIN FQQPSSSVSS SIEEPDPEAI AQMKEMIYRA  300
AAFRPVNLGL EIVEKPKRKN VRISTDPQTV AARQRRERIS ERIRVLQRLV PGGSKMDTAS  360
MLDEAANYLK FLRSQVKALE NLGHNKLDPM SCPPPTTNLP NFSSLPFNHS LPMQTHFPLL  420
NPNHIHHPQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	338	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-67	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO70913