PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO71049
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 452aa    MW: 49769.7 Da    PI: 7.3228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO71049genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-20281330356
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
               ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  OMO71049 281 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAMAYDTAAYMLRGE 330
               8******9.**********955...5*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MSMEDQFPKM ETFMNKEWAA NYVYGMANGP KFFNDPIIWG ALTGNNTVSH ENGSGTGSNK  60
SPSSSSTTTS PDRLLSSSPN SSSSAEEVPG SKLSQNIPGF IKQDVMNEHH SSFLVSGFTS  120
VHPPGNPVSD AKDGFIPVNF LESFPKLNQA QVSEPPSPPS SLSPTSKFPN LTLFLQEPTM  180
LDPSTGVNID SIGKKSEPTS TLSQNPPFHL PQPGQIQSQP GNEWLRINQS LTNYQSKGFS  240
DYWLSTTKTQ PMKYTGRRLQ NQHQKGNPSL PSASSSPGKL FRGVRQRHWG KWVAEIRLPR  300
NRTRVWLGTF DTAEEAAMAY DTAAYMLRGE YAHLNFPDLK HQLKANSLNG NTAALLEAKL  360
QAINNSATNK KSSSNDPSPT PAKVKDLNQN MAERGWEFGV ESKTGICCQV MNENNKKTQE  420
MMLPSDMDAV QLSRMPSLDM DMIWDALLVS DS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-67ERF family protein