PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO71395
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 240aa    MW: 27580 Da    PI: 8.308
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO71395genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.6e-35281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y +++d++++++isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg++ell++i+
      OMO71395  28 FLLKTYMMVDDPATDDVISWNADGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFQKGERELLCNIR 115
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      OMO71395 116 RRKA 119
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MLMDQSMASD SNNKGLLEYV RKSTPPPFLL KTYMMVDDPA TDDVISWNAD GTGFVVWQPA  60
EFARDLLPTL FKHSNFSSFV RQLNTYGFRK VATSRWEFCN DMFQKGEREL LCNIRRRKAW  120
ANKQQNAAPT QASPQESEED QRSSSTSSSS GYNSLVDENK RLKKENGVLS SELTSMKRKC  180
KELLELVAKY AQFEKEKEDD HDHSPKLFGV RLEVEGERER KRRRAEISES ASILLSQSCK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220224RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.17e-67HSF family protein