PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72022
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 237aa    MW: 27084.1 Da    PI: 4.6375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72022genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-1998147355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr+++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  OMO72022  98 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALAMRG 147
               9*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MDSSYFQYPY SQFSPDQSSN SNSYVSQENL SLDPFNYPYN NNNQPLQLPF NENDSEEMLL  60
LGVLNQAPAR SDEHEVSSES NSSEEESARE NNNNNISYRG VRRRPWGKFA AEIRDSTRNG  120
VRVWLGTFDT AEAAALAYDQ AALAMRGSMA ILNFPMEKVY ESLQEMNYGF QEGFSPVLTM  180
KKRHSLKSKR GMKMMKKVKK EKEIIRMENV VVLEDLGTDY LEELLSISES SSSSTLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-43ERF family protein