PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72023
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 238aa    MW: 26868.7 Da    PI: 4.5835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72023genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19100149355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++++g
  OMO72023 100 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAALAMRG 149
               9*******.**********44465..*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDSSFFHYPN LQFSPDQSSS YSSYVSQENL SSIDSFNYPH NNQALPFNEN DSQEMLLLGV  60
LNQAAPENSF DTTSVNSFRD DNNNNEVNSN SETTAKEISY RGVRKRPWGK YAAEIRDSTR  120
NGVRVWLGTF DTAEAAALAY DQAALAMRGP MAVLNFPMDK VYQSLQEMNY GFEEGCSPVL  180
TMKKRYSMKS KRSPGNKKIK KETKENGVEN ILVFEDLGAD YLEELLSISE SSVSSPYW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-43ERF family protein