PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72171
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 130aa    MW: 15357.3 Da    PI: 8.4588
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72171genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.22.3e-17410531128
       NAM  31 eevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmhe 125
                ++++e+d+y + ePw++      ++++++++yfF++ +kk+ +g+r nr++ sg+Wk   + ke+++   + +  g +k + + +g+ ++    +W++he
  OMO72171   4 GNMVQECDLYGHkEPWEIWDmfgGATHNQEDVYFFTQLKKKSCNGSRINRSVGSGTWKGEDSGKEIKDPrySPTPLGFRKRFRYEDGNPEQ--IGRWILHE 102
               467999****8879****73244444466789***********************************98666667*********9887776..89****** PP

       NAM 126 yrl 128
               yrl
  OMO72171 103 YRL 105
               *98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MEMGNMVQEC DLYGHKEPWE IWDMFGGATH NQEDVYFFTQ LKKKSCNGSR INRSVGSGTW  60
KGEDSGKEIK DPRYSPTPLG FRKRFRYEDG NPEQIGRWIL HEYRLSDSLI KNDMDYVLCR  120
LRKNERGNKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-18NAC family protein