PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72390

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 440aa MW: 49106 Da PI: 5.7474

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72390	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30.3	8.8e-10	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C ++ H+ H++v OMO72390 16 ARACDSCIKKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 59 578*****************************667888888876 PP
2	CCT	68.1	2.3e-23	384	427	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ OMO72390 384 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 427 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MISSKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR 60 LKTSSLKSTN NEGCDLETAP SWHKGFTRKA RTRRPTKVSS IHQKLKAEYT KRNCSNPVPL 120 VPEVGADEIS HEENEEEQLL YRVPIFDPFV AELCTSTTSN EEAAVGNNIE LADAAASHES 180 KACLGCNGQD GLFPSEMDLA EFAADVESLL GKGLENESFA MEELGLMDSN KDNDFKECCL 240 ANGKVKIEDE ESFEAGGRDK CQADSEMDMA REPFELNFDY DSPASCGEQD ESVKDEVTLK 300 YKEEGYSTKI SKKRKILLSL DYESVIAAWA TQGSPWTSGD RPEFDPDEYW PDCMGTGGTE 360 FHHCSDLIGM GMGGLQQAMG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK 420 GRFVKRTSFV APPVFSLHNK

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MISSKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR  60
LKTSSLKSTN NEGCDLETAP SWHKGFTRKA RTRRPTKVSS IHQKLKAEYT KRNCSNPVPL  120
VPEVGADEIS HEENEEEQLL YRVPIFDPFV AELCTSTTSN EEAAVGNNIE LADAAASHES  180
KACLGCNGQD GLFPSEMDLA EFAADVESLL GKGLENESFA MEELGLMDSN KDNDFKECCL  240
ANGKVKIEDE ESFEAGGRDK CQADSEMDMA REPFELNFDY DSPASCGEQD ESVKDEVTLK  300
YKEEGYSTKI SKKRKILLSL DYESVIAAWA TQGSPWTSGD RPEFDPDEYW PDCMGTGGTE  360
FHHCSDLIGM GMGGLQQAMG DGGREARVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK  420
GRFVKRTSFV APPVFSLHNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	395	411	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-102	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO72390