PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72406
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family E2F/DP
Protein Properties Length: 357aa    MW: 39207.7 Da    PI: 6.8042
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72406genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-27102184271
   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
               ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OMO72406 102 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsvaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 184
               689********...*****999*******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MVTGSNHIQN HNPQEDGGEK NPTKGGASRS WGTTGSGQSV STSGSVGSPS SRSEQAMATP  60
ASENTFLRLN HLDIHGDDAG SQGAVGSKKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK  120
GRTTYNEVAD ELVAEFADPS NSVASPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWKGLPRTSL NDIEELKAER LALRSRIDKK AAYLQELEEQ FVGLQNLIQR NEQLYSSGNA  240
PTGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK AMKFCDRPQS  300
DEMAQAQNIS ADGEGPSSMP AMYQQQIIPP PRTNTPGRPP TSPPLPGILK ARVKHEH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-155E2F/DP family protein