PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72442

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 210aa MW: 22607.5 Da PI: 7.3446

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72442	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.8	4.9e-35	46	127	8	73
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssasec 73 ++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+ s ++s++ OMO72442 46 SKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGSgtvlaaheiscaagpissS--ASSAS 127 79********************************************************8888777777766655321..22111 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MALHKFSSAT NGHQNSNVNS LVVVPTESTP KNQLGLPARK PVSSLSKDRH TKVNGRGRRV 60 RMPALCAARI FQLTRELGHR SDGETIEWLL RQAEPSIIAA TGSGTVLAAH EISCAAGPIS 120 SSASSASVSC QVQQVAVGSG GGVMAGMYAP PPSCRLDLCQ PMGFHYPALG RNGYQHMPFT 180 ALLLQPTTAE EVEERQHIEE EEEDIKHHHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-46	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO72442