PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72446

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 473aa MW: 52851.8 Da PI: 9.022

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72446	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.4e-09	344	391	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G g+W+ I r++ Rt+ +++++w+++l OMO72446 344 WTLAEVIKLVDGIAEYGVGRWTDIKRHLFassAYRTPVDLRDKWRNLL 391 ******************************99**********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MKKLADMKRQ RVDKSVVPGL EDEATEVEHL LVEPKSDHVS VDRVLCFGLE NLEKHLKMED 60 FSYAFDYGWK INCGGLDSVH GQGGDDLKLE VLDGLLDEVD EVDDIHAAQD LSGVCEDFLL 120 DIEFPNKLSQ LDCRPHEGSN LHNSSSESHS PGFSGSSAGV GGILESSIAT VLESNSENGV 180 LGKMVVCELH QTFRSKCGCQ APVVDTICPT TEPAQDLDDP DDYDKPLVSF IMSNKKLKGS 240 IKVTKGGTLL RQKRLHKHTR KYIEEHSTKS TASGKNKHLK VGSQEEPPQV PSDTRPRRGH 300 PKKIAPKLDL GSDYELSASE SEDERKRTKR SKKASDRRKH QKMWTLAEVI KLVDGIAEYG 360 VGRWTDIKRH LFASSAYRTP VDLRDKWRNL LRSSSGHKHN RKEVENNTKH AARLLPKSVV 420 RRVRELATIH PYPRVRGKKA SSVDSCVPSS KQLTTTKGDP VPPRAKSLRR KKE

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MKKLADMKRQ RVDKSVVPGL EDEATEVEHL LVEPKSDHVS VDRVLCFGLE NLEKHLKMED  60
FSYAFDYGWK INCGGLDSVH GQGGDDLKLE VLDGLLDEVD EVDDIHAAQD LSGVCEDFLL  120
DIEFPNKLSQ LDCRPHEGSN LHNSSSESHS PGFSGSSAGV GGILESSIAT VLESNSENGV  180
LGKMVVCELH QTFRSKCGCQ APVVDTICPT TEPAQDLDDP DDYDKPLVSF IMSNKKLKGS  240
IKVTKGGTLL RQKRLHKHTR KYIEEHSTKS TASGKNKHLK VGSQEEPPQV PSDTRPRRGH  300
PKKIAPKLDL GSDYELSASE SEDERKRTKR SKKASDRRKH QKMWTLAEVI KLVDGIAEYG  360
VGRWTDIKRH LFASSAYRTP VDLRDKWRNL LRSSSGHKHN RKEVENNTKH AARLLPKSVV  420
RRVRELATIH PYPRVRGKKA SSVDSCVPSS KQLTTTKGDP VPPRAKSLRR KKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	3e-25	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO72446