PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72482
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 201aa    MW: 22773.7 Da    PI: 6.7899
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72482genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.35.8e-2751351128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
               lppGfrF Pt+e+l++ yL kkv+g+ l++ ++++++diy    ePw++    ++++++ y F+k +k +a+gk+ +r++ +g+Wk + k k v+++++++
  OMO72482   5 LPPGFRFMPTEEQLLHGYLLKKVKGEALPC-DIVTDCDIYGDgkEPWKIF--GENSTEKFYVFAKLKKVSANGKNIERKAGTGTWKGQ-KPKIVKDSNNNH 101
               79****************************.99*******7555*****6..34456788**************************66.456667779999 PP

       NAM 100 vglkktLvfy.....kgrapkgektdWvmheyrl 128
               +gl k++vf      +g+a++ ++ +W+mhey+l
  OMO72482 102 IGLNKSFVFQvknsgSGSASSNVNGHWLMHEYSL 135
               **********8887778999999*********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MAVQLPPGFR FMPTEEQLLH GYLLKKVKGE ALPCDIVTDC DIYGDGKEPW KIFGENSTEK  60
FYVFAKLKKV SANGKNIERK AGTGTWKGQK PKIVKDSNNN HIGLNKSFVF QVKNSGSGSA  120
SSNVNGHWLM HEYSLVNDQS GYVLCVIRNK ISNSEQVEDE DKEFTAEEFE DKLSTPEIQP  180
FSHHQQQQNY YMPPLAALSY Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-21NAC family protein