PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72493

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

E2F/DP

Protein Properties

Length: 307aa MW: 34649.4 Da PI: 10.2158

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72493	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.7	4.1e-23	21	86	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL++l+++fl+l++k + + l+e+a +L v +rRRiYDi+NVLe+++++++++kn+++wkg OMO72493 21 RKQKSLGVLCSNFLTLYNKDGIDLIGLDEAAARL---GV--ERRRIYDIVNVLESVGVLTRRAKNRYTWKG 86 79***************999********.....****************************98 PP
2	E2F_TDP	53.3	4.4e-17	94	158	17	71
E2F_TDP 17 lekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 l+ ++++++l+++ak L+ + +++k+RR+YDi+NVL+++nliek ++k+++rw g OMO72493 94 LQDLKTEMISLDDAAKLLLGNahntsIMRTKVRRLYDIANVLSSMNLIEKthtidTRKPAFRWLG 158 6778899*********9999999**********************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MPLSSSSSLP DSSSRHYTYS RKQKSLGVLC SNFLTLYNKD GIDLIGLDEA AARLGVERRR 60 IYDIVNVLES VGVLTRRAKN RYTWKGFGAI PKALQDLKTE MISLDDAAKL LLGNAHNTSI 120 MRTKVRRLYD IANVLSSMNL IEKTHTIDTR KPAFRWLGYG ENSEKRALAL ALDESRKRAF 180 GTDVTNICSK RNKGDQISND ANRFMKMQKK IKVENMVTVA VADRSCLEDS KQGPKSYQFG 240 PFAPVNLANI GNSENNVRRA HDLESLASTY RPQYQNQALS DLFSHYKEAW KSWYTEVAGK 300 KPVQQIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	5e-69	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OMO72493