PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72522

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 496aa MW: 54290.3 Da PI: 10.0093

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72522	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H OMO72522 65 FICEICNKGFQRDQNLQLHRRGH 87 89*******************88 PP
2	zf-C2H2	12.8	0.00037	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OMO72522 141 WKCEKCSKKYAVQSDWKAHSKTC 163 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MSGEAFSMPP SVAGFIQDHQ TNATNPNPKP NPNPPKKKRN LPGTPDPDAE VIALSPKTLM 60 ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE VRKKVYICPE KSCVHHDPSR 120 ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREKDS FITHRAFCDA 180 LAEESARFTS VAAANSNLNF RNDSVNLPPQ IHGIPQFGSG FGQDHFTGMP ATGLPEMVQM 240 ASANLFGSSS LTNFGHQFPG FDHKNNGGAT STNTANLSLS PILPQGLKEE NGSKSNLMES 300 LSSLYNSDAT QNKQSNKPAA PMSATALLQK AAQMGSTRSN NSSIFGNTFG VMSSSSTSTH 360 QNRNIDHHQN QHQQQQMNQV YPNPNMNQQD HQNSMSSAAG LGTSSNLNST SCNSNFDQMM 420 LQNTGSAKQS DPISSNQVKM QQQGSNSIDQ SLTRDFLGMG NDQTGRRPFL AQELAKFASI 480 GSTMGLSQFT SSSSNH

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MSGEAFSMPP SVAGFIQDHQ TNATNPNPKP NPNPPKKKRN LPGTPDPDAE VIALSPKTLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTNKE VRKKVYICPE KSCVHHDPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KTCGTREKDS FITHRAFCDA  180
LAEESARFTS VAAANSNLNF RNDSVNLPPQ IHGIPQFGSG FGQDHFTGMP ATGLPEMVQM  240
ASANLFGSSS LTNFGHQFPG FDHKNNGGAT STNTANLSLS PILPQGLKEE NGSKSNLMES  300
LSSLYNSDAT QNKQSNKPAA PMSATALLQK AAQMGSTRSN NSSIFGNTFG VMSSSSTSTH  360
QNRNIDHHQN QHQQQQMNQV YPNPNMNQQD HQNSMSSAAG LGTSSNLNST SCNSNFDQMM  420
LQNTGSAKQS DPISSNQVKM QQQGSNSIDQ SLTRDFLGMG NDQTGRRPFL AQELAKFASI  480
GSTMGLSQFT SSSSNH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	104	KLRQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-104	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO72522