PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72583
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YB
Protein Properties Length: 244aa    MW: 26377 Da    PI: 7.0159
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72583genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.89.8e-5632126195
     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
               vreqdr+lPian+srimkk lPan+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre ++
  OMO72583  32 VREQDRYLPIANISRIMKKGLPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDT 126
               69*****************************************************************************************9665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MADAPAAPAQ AAPASPGGGS HESGEQSPRS NVREQDRYLP IANISRIMKK GLPANGKIAK  60
DAKETVQECV SEFISFITSE ASDKCQKEKR KTINGDDLLW AMATLGFEDY IDPLKIYLTR  120
YREGDTKGSA KGGDASAKKE VQPSPNAQLA HQGSFPQGVN YGNSQVISLS LSVHVNYKPK  180
SLHVFFGIDY IPKDCVNLGL IVDLSSWRGL NVLLSSSVME YGPIFDSIGI GFLLFPVSHC  240
ICLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.18e-77NF-YB family protein