PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72616
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 301aa    MW: 32739.1 Da    PI: 9.4975
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72616genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.2e-144185147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
         OMO72616 41 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 85
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MNSSSSPSPN PNPPPQSSTS TTSSDASGKK VRKPYTITKS RESWTEEEHD KFLEALQLFD  60
RDWKKIEDFV GSKTVIQIRS HAQKYFLKVQ KNGTIAHVPP PRPKRKAAHP YPQKASKNVL  120
VPLQASMAYP SSINTIGPGF APWDEASMLV NTPTSKIMPP QDEFTSLRGA EADIGSKGVA  180
RIGNSGVSAI GSSSRTIPSS DVPKQGKQAT MLHGIPDFAE VYSFIGSVFD PDTGGHVQKL  240
KEMDPINFET VLLLMRNLTV NLCSPDFEPI RKVLSSYDIS TKTVGAAAGI IPHSQMNDIS  300
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-126MYB_related family protein