PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO72728

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 178aa MW: 19774 Da PI: 10.0347

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO72728	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++Fs+ L H +H OMO72728 46 FECKTCHRRFSSFQALGGHRASH 68 89**********99999998887 PP
2	zf-C2H2	15	6.9e-05	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H OMO72728 97 HECSICGQEFSMGQALGGHMRRH 119 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MSMKRGRESV EIQGFDIAKC LMLLSQGLTE TKPKSQNLLL DQSEVFECKT CHRRFSSFQA 60 LGGHRASHKK PRLMNDQKAN ETTPFLTLST TTKSKTHECS ICGQEFSMGQ ALGGHMRRHR 120 AAMNDGFSAA FPIVSAVPVL KRSNSSKRVV CMDLNLTPLE NDLKILFGTK APKVDLCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	2e-54	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO72728