PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO72827
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 566aa    MW: 62193 Da    PI: 6.1537
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO72827genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.5e-25117218199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+ltpsd+++ g +++p+ +a+++        +++ +   l ++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++s++++++
  OMO72827 117 FAKILTPSDANNGGGFSVPRFCADSIfppldynAEPPVQ--NLDVTDVQGGVWEFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RDSRGKMFI 213
               89*********************999****986555556..69999********************************************..5689999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +v+r+
  OMO72827 214 GVRRA 218
               **997 PP
2Auxin_resp88.99.2e-30256339183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa++a ++ +FevvY+Pra++++Fvv++e ve+a+++ ++ G+R+kma+etedss+ ++ +Gt+++    d+  W +S+Wr+L+
    OMO72827 256 AAERAVKGLPFEVVYYPRAGWADFVVRAELVEAAVNTFWAGGTRVKMAMETEDSSRMTWfQGTIMSAAVPDSGPWVGSPWRMLQ 339
                 67888999**************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    
MPLPRPPPPT ELRHVDSRIW RACAGNSVQI PTVHSRVYYF PQGHVEQSCG STSLLSPLVL  60
SRPLVPCVIS EVHCLADPKT DEVFAKLLLF PVEPSRLPNQ FLNINGEDDD SDKIVSFAKI  120
LTPSDANNGG GFSVPRFCAD SIFPPLDYNA EPPVQNLDVT DVQGGVWEFR HIYRGTPRRH  180
LLTTGWSKFV NNKKLIAGDS VVFMRDSRGK MFIGVRRATK RGEVGGDSGR WREANNGGAM  240
RWEGRGRMTA EAVAEAAERA VKGLPFEVVY YPRAGWADFV VRAELVEAAV NTFWAGGTRV  300
KMAMETEDSS RMTWFQGTIM SAAVPDSGPW VGSPWRMLQV AWDEPEVLQN AKRVSPWQVE  360
IVSSSPLHPS IPSAKKFKYS QDSGLTDPEG EIFFPMTGFT NSTLGYMNPS LLNYNSFPAG  420
MQGARQNHFH LQSLTNSVSE NSPMIYTDSI SGNFMVPNLK RISTELNIGS SASDNLSPDS  480
QSSILSYGTE LTENGGSNSS KAGGSSIQLF GQIIHQTEPV GSRFDDVGHD LGKRYEEGAD  540
VTGYSKLLDR LDVQCQRASA VEGFSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-175ARF family protein