PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO73260

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 523aa MW: 58372.9 Da PI: 7.4026

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO73260	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.3e-05	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F L H+r H OMO73260 45 FSCKVCGKEFEAMKALFGHMRHH 67 89*******************99 PP
2	zf-C2H2	17.8	9.4e-06	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F + L+ H+r+H OMO73260 76 FACKECGKKFQSLRALTGHMRLH 98 78*******************99 PP
3	zf-C2H2	14.5	0.0001	354	376	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+ksF+++ L H+ H OMO73260 354 YKCKICNKSFKSHRALGGHQTFH 376 9***************9999877 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MEKYSGKGKE KENMYFQGYG LRDNPKKSWK SSGFVDGSSS SAVMFSCKVC GKEFEAMKAL 60 FGHMRHHSKK ETKGRFACKE CGKKFQSLRA LTGHMRLHSV KLRASESPRK DLVLESKTVR 120 RKRSKRPRYS NTPNSSFSSL NASSGVVEIE IDEELEYVAL CLMMLSKGVR NGIEFNSFDD 180 NPDSSEIKSS YQNKEIMEIN ENDDPFCDGN EFFQVKKPRV YKSDSDVSDS VNVSFENEIS 240 GCKELDFGIV AYNEKKVGTK VDVESGFELY DAEIEERISG EVITLGSIEV ESGQVLIKGM 300 GLAGLGATEI ELSSCKDAMY DACDAETGGD SLNKLICVPF NSKMSDDFLK KNKYKCKICN 360 KSFKSHRALG GHQTFHRKMN NCAVEQTENC DNNTQGSSAP ETDSGLKLVK VDYAKNPLQQ 420 EMTGVTDYGT RVYKVHRCQI CSKVFASGQA LGGHKRCHTH ISKESESRDR QLKKQLEFAD 480 ICDAMDLNHP FIHTEEANGD VGFMACRVGS DCKREALLSL VAN

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MEKYSGKGKE KENMYFQGYG LRDNPKKSWK SSGFVDGSSS SAVMFSCKVC GKEFEAMKAL  60
FGHMRHHSKK ETKGRFACKE CGKKFQSLRA LTGHMRLHSV KLRASESPRK DLVLESKTVR  120
RKRSKRPRYS NTPNSSFSSL NASSGVVEIE IDEELEYVAL CLMMLSKGVR NGIEFNSFDD  180
NPDSSEIKSS YQNKEIMEIN ENDDPFCDGN EFFQVKKPRV YKSDSDVSDS VNVSFENEIS  240
GCKELDFGIV AYNEKKVGTK VDVESGFELY DAEIEERISG EVITLGSIEV ESGQVLIKGM  300
GLAGLGATEI ELSSCKDAMY DACDAETGGD SLNKLICVPF NSKMSDDFLK KNKYKCKICN  360
KSFKSHRALG GHQTFHRKMN NCAVEQTENC DNNTQGSSAP ETDSGLKLVK VDYAKNPLQQ  420
EMTGVTDYGT RVYKVHRCQI CSKVFASGQA LGGHKRCHTH ISKESESRDR QLKKQLEFAD  480
ICDAMDLNHP FIHTEEANGD VGFMACRVGS DCKREALLSL VAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67450.1	2e-12	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO73260