PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO73420

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SRS

Protein Properties

Length: 258aa MW: 27648.1 Da PI: 9.0548

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO73420	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	188.7	2.1e-58	76	231	6	153
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstklssaeskke 99 + C+dCGn+akk+C ++RCRtCCksrg+dCathvkstWvpa+kr+e+ ++ ++ ++ kr+r l+s+++ + +s +l+ ++ ++ OMO73420 76 KVCRDCGNRAKKECGFSRCRTCCKSRGYDCATHVKSTWVPASKRKEKDRKVVVIGDDDGGGGgggssgsSSCGGKRPRILSSTSNGTPKSLNLEAGNIHQD 176 57******************************************9888877766665544667776667778999999***********998887 PP DUF702 100 letss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + +++ lP +v+++avfrc++v++++dge+e+aYq++v+i+GhvfkG+Ly++G++ OMO73420 177 SRFKEsLPGQVRAPAVFRCIQVTAISDGEAEVAYQATVNISGHVFKGFLYNKGVD 231 776544*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MLGLHNIFLI APPQQNQQQP APPPPPPPHQ QPFNQGYNLS DTNIWTLKRS STQEPPVCQK 60 KDGVLNGVEG DDGRFKVCRD CGNRAKKECG FSRCRTCCKS RGYDCATHVK STWVPASKRK 120 EKDRKVVVIG DDDGGGGGGG SSGSSSCGGK RPRILSSTSN GTPKSLNLEA GNIHQDSRFK 180 ESLPGQVRAP AVFRCIQVTA ISDGEAEVAY QATVNISGHV FKGFLYNKGV DVKNAFPCIS 240 KMLFESSSSG NTFAASGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	7e-48	SRS family protein

Link Out ? help Back to Top
Ensembl	OMO73420