PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO73553

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 279aa MW: 31959.8 Da PI: 9.4135

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO73553	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	113	136	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C k F +L +H + H OMO73553 113 WRCGYCRKNFYEEKYLDKHFDNrH 136 58*****************77666 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGKWSKGVVF LFLCLSICVQ IASVSSSTSP LQGNQGNKES AATRTFKQEQ GDAHVVHCSR 60 ERSRAAWKII EEYLMPFVEK EGYKFSTKCR LHADNDMYRD QEQHKQHVDI NEWRCGYCRK 120 NFYEEKYLDK HFDNRHFDVL NESHSRCLAD MCGALHCDLV MDSAPRKTKC NPAAAARNKH 180 LCESLADSCF PVSNGPVSGR LHEFFLRQFC DAHTCTGGPK PFSKGRKKRS SILYISISIL 240 TLLLLPLLYT FVYLYQRGIK RGSQELKRIS LGGRKKKAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-97	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO73553