PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO73872
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 215aa    MW: 23406.8 Da    PI: 9.8346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO73872genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-111381781055
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  OMO73872 138 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 178
               9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MGNAEQQQQT GKTQNLEPKR ESEIPKPEVP IAADNKITSN LSETSKKRSR SSGDSTTRKN  60
ARSKKNQISV STTNNNDEDG GLNGQNSASC SSEDESNASQ DLNGGVSSSS KGQSALNSNG  120
KTRASRGAAT DPQSLYARKR RERINERLRI LQNLVPNGTK VDISTMLEEA VEYVKFLQLQ  180
IKLLSSDDLW MYAPIAYNGM DIGLDLKVGA TPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-53bHLH family protein