PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO73876

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 300aa MW: 34736.9 Da PI: 4.632

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO73876	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.6	5.2e-14	9	95	1	93
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffkv + ++ s +++p + + +g+ t tl++++++ W v++ + g++++++GW +Fv++n +++gD++vF+++g+s f + OMO73876 9 FFKVYYSRYT--SETMCIPPNTVVLPKGS--MCATATLRNSKNKCWHVEV--KEFAGKMYFERGWTKFVDENPIDDGDILVFTYVGSSLFDVT 95 6676644444..44578888888444555..4469*************..999999*************************98877444 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MSNFQAVNFF KVYYSRYTSE TMCIPPNTVV LPKGSMCATA TLRNSKNKCW HVEVKEFAGK 60 MYFERGWTKF VDENPIDDGD ILVFTYVGSS LFDVTVMGPN GCMKSVEEVE EEEEEEEDDN 120 DDGDYCEIEG DDSELKSEEE EEIEVLGTSN KKGKNKGCRE ETSSKEVEDV EFYIARNVNQ 180 LNPCFVVKGR KNRNNELYVP TDVTKNYNLV LEDEEEITFI DPLGREMIGK VFKWKDGRIC 240 IHGWKSVCMI NRVNLHRDVC ICEFLLEEQD DRGHTNRIKV HIRRGNYTSS NEARPRKKKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-13	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO73876