PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO73922
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 208aa    MW: 22381.3 Da    PI: 7.5101
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO73922genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.22.8e-19294197
    DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
              +C++C+vlr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++ + +r+++          ra +Pv+Gavg++++++++++q++++++l+
  OMO73922  2 SCNGCRVLRKGCSENCMLRQSLqcidnPQAQANATVFVAKFFGRAGLMSFLSSVAQPQRPAV---------GRAINPVSGAVGLLWTGNWNVCQSAVQTVLR 94
              6**********************99**********************************965.........7788********************9998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MSCNGCRVLR KGCSENCMLR QSLQCIDNPQ AQANATVFVA KFFGRAGLMS FLSSVAQPQR  60
PAVGRAINPV SGAVGLLWTG NWNVCQSAVQ TVLRGGTLQP LPEFSGGVSG SDLEDVAETV  120
GGNLGQCFRT REEDFVKRKG FCDVVKCEPL PNDLDLCLMI GDSNRAAKRR REDTPSEESE  180
TTTLGSRSNS GDGGSSKDGE RQLLRLFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-52LBD family protein