PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74168
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 1113aa    MW: 127398 Da    PI: 7.53
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74168genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-1579163797
               .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               +s+++  +  ++p +f++++  +   s+   l+ ++g +W+v +  +k ++++++++GW+eFv+   +++g f+vF+++g+s f   v++f
  OMO74168  79 TSSTNDDNTNRIPDNFVKKFRDE--LSVAAALTVPDGHVWRVGI--KKADNKVWFQEGWQEFVERYYIRVGYFLVFRYEGNSAF--SVSIF 163
               45556666678******999755..999****************..**********************************9999..88877 PP
2B356.45.3e-18310396494
               E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    +++GW eF  +n+L egD++vF+l +++ef l+v
  OMO74168 310 VLRPSYLYRGCIMYLPSCFAEKHlSGVSG---FIKLQLPDGRQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKV 396
               78899******************866743...5***************666665..5699*********************99878885444 PP
3B340.74.1e-133994721897
               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               +p kf++++g +   s   tl  +sgr W v+l  +k  +r+++  GW++Fv+   +++g f+vF ++g+s f  +v+v+
  OMO74168 399 IPHKFVKKYGDE--LSPIATLAVPSGRIWLVEL--KKDNKRMWFDIGWNQFVEYYSIRVGFFLVFGYEGNSHF--NVHVY 472
               9********855..66699**************..99999999**************************9*99..66655 PP
4B338.52e-12690760478
               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
               +l ps+v k  +l +p+ f++++ ++  ++ t+tl+ ++g+ W v + y  + g   ++kGW eFv +n+L+egD
  OMO74168 690 TLQPSYVYKGILLHVPRWFTRRYLNE-VTG-TVTLQGSEGKNWPVHCVY--GNGNLKFSKGWAEFVLDNKLDEGD 760
               6789*******************433.343.8***************55..4445779****************9 PP
5B336.86.8e-128128941197
               HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                +++ l lp +f++++g++   s   tl  ++g+ +e++l++++++++++l +G  eFv+   +++g ++ F+++++s+f  +v + 
  OMO74168 812 IAEKKLKLPTRFVKRYGHE--LSNVATLILPNGKNFEIRLTMDNNDEMTWLDNGFHEFVEYASIRSGHMLFFRYERNSTF--LVCIM 894
               556779**********965..8899*************************************************999999..88776 PP
6B351.42e-1610161108498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98  
                v ++ +++ sg+l++p  fa+e+ +++   k +++e+++gr+W+++++ + +++++ l+kG  eF ++n+Lk gD+++F+l++ +++ l ++++r
  OMO74168 1016 VIMRQYNFVSGNLYIPVGFATEYLSSQ-ALKHVRIEHSDGREWSIEFQ-SHGKNSMSLKKGCYEFWNDNDLKNGDVCIFELKDYNTALLSLSILR 1108
                5678999999*************4444.4469***************5.55556689***********************987666656666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    
MIPTPISNIA SSALSLSWAD SLIRDCMGNW IMGTYRHLGR ASNFLAECWG LRDGLYIAQL  60
CNITKIVVEL DATSLIAATS STNDDNTNRI PDNFVKKFRD ELSVAAALTV PDGHVWRVGI  120
KKADNKVWFQ EGWQEFVERY YIRVGYFLVF RYEGNSAFSV SIFNLYNSEI NYQSNALVGA  180
QFNHGKQYPF DELEDDECIS PALQNLFGSS KLNNCITWTG EVNIPTAKAV NNQAIRAAEA  240
PKPKKRGRKK QKFDPNEQEA AAGHENDVEM RFRFYESASA RKRTVTAEER ERAINLAKNF  300
EPANPFCRVV LRPSYLYRGC IMYLPSCFAE KHLSGVSGFI KLQLPDGRQW PVRCLYRGGR  360
AKFSQGWYEF TLENNLGEGD VCVFELLRSR EFVLKVTKIP HKFVKKYGDE LSPIATLAVP  420
SGRIWLVELK KDNKRMWFDI GWNQFVEYYS IRVGFFLVFG YEGNSHFNVH VYDLTASEIN  480
YLSNASLNNS EDSSHDEHVK NVKDGDLAEI MGSRPNCSGS SSLTDKEVDE CLDHDMEKNN  540
NSTCGACLKI LHQKNVVHDS QATFGSTQDK GIRFSRVELT GTADKGGRRF TNETHQIIEK  600
IKQEIEPSKH LELKSILYRV FLIDFFHPNS LKDIDEHESL GKIEVKKELP STESPRKMSR  660
RWRDVTSEER QNAVRAAETF KPDNPFCRIT LQPSYVYKGI LLHVPRWFTR RYLNEVTGTV  720
TLQGSEGKNW PVHCVYGNGN LKFSKGWAEF VLDNKLDEGD RRETVRSFVT RAKSIYIHGS  780
GSDSPDKNKI KSRSCREGIF AFFSRQILPG TIAEKKLKLP TRFVKRYGHE LSNVATLILP  840
NGKNFEIRLT MDNNDEMTWL DNGFHEFVEY ASIRSGHMLF FRYERNSTFL VCIMDMESAC  900
DVDYPTEDEE LNNGDNDERH SIEKTANLDK KANQEAIRRK QDAFISVQAQ DLKELYDGKK  960
LKITIQRANA ESGKEEEEIG IYVSRNLFGT TATSQDRERA IRAIEIFQPK NPCFMVIMRQ  1020
YNFVSGNLYI PVGFATEYLS SQALKHVRIE HSDGREWSIE FQSHGKNSMS LKKGCYEFWN  1080
DNDLKNGDVC IFELKDYNTA LLSLSILRAG SIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429435LKKDNKR
2938962RRKQDAFISVQAQDLKELYDGKKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-127B3 family protein