PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74169

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 417aa MW: 47548.9 Da PI: 9.9643

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74169	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.1	2.5e-16	248	329	12	98
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +s+ l +p +f+++h ++++ + + +l+d sg W++ + kk+++++++ GW++F k++ +++++f+ F+++g+++f +v++f+ OMO74169 248 ASQSLEIPPDFVRNH-LPNPIPSKAVLKDHSGDCWNISI--IKKRNKTIMKHGWNQFYKDHCIRDKEFLFFRYNGDMSF--NVQIFD 329 445699****888.45568889***********..999999******************************..999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MKKSSKEAER DLLPFDNRPC FSVTPHESSQ RLEIPPDFVR NHPPKPIPSK ASSRRHQATP 60 QVKEEEIDID DLVEIIESNV QIANKTKIKT TTGQNPDQAR VKKHNPSCFS AHLPQGNGSG 120 GGGGGGRKYE KLNKEKMQKL AISELSHKKF KPSPPPKIIR NNISSSDGKT QTQLPLRHSS 180 SSRLKTMAPV SSNGERVYDP TNEKTCHKYR NLESKKKISK STAGRDVRPI DNRPCFYIIL 240 YPMTPEEASQ SLEIPPDFVR NHLPNPIPSK AVLKDHSGDC WNISIIKKRN KTIMKHGWNQ 300 FYKDHCIRDK EFLFFRYNGD MSFNVQIFDI SGREKKHVST SRRAHQATPE VKEEEMDIVE 360 VVELEIESHE RSCCKQGKEE KNNNINGDKS NKSKEYLQSS SRFQLQIPSF QALLDKV

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MKKSSKEAER DLLPFDNRPC FSVTPHESSQ RLEIPPDFVR NHPPKPIPSK ASSRRHQATP  60
QVKEEEIDID DLVEIIESNV QIANKTKIKT TTGQNPDQAR VKKHNPSCFS AHLPQGNGSG  120
GGGGGGRKYE KLNKEKMQKL AISELSHKKF KPSPPPKIIR NNISSSDGKT QTQLPLRHSS  180
SSRLKTMAPV SSNGERVYDP TNEKTCHKYR NLESKKKISK STAGRDVRPI DNRPCFYIIL  240
YPMTPEEASQ SLEIPPDFVR NHLPNPIPSK AVLKDHSGDC WNISIIKKRN KTIMKHGWNQ  300
FYKDHCIRDK EFLFFRYNGD MSFNVQIFDI SGREKKHVST SRRAHQATPE VKEEEMDIVE  360
VVELEIESHE RSCCKQGKEE KNNNINGDKS NKSKEYLQSS SRFQLQIPSF QALLDKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	5e-14	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO74169