PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74223
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 132aa    MW: 15112.4 Da    PI: 8.4625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74223genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-134102199
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE- CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfr 98 
               f kvlt  dv+++  l++p +++    ++  +   l ++d +g  W++ + +  + s + v+ +GW +Fv+ +gL+egD+v F+++++  s++++++ v+r
  OMO74223   4 FTKVLTETDVNRK--LSFPENCVIPA-LQAFKAEVLLVKDDTGTLWRFVCAIrYGVSPKPVIISGWIQFVQNKGLQEGDTVYFYREDDviSGAHYKIEVRR 101
               8899988888887..88888888433.444445579999***********55344444578888********************98555888989998888 PP

               S CS
        B3  99 k 99 
               k
  OMO74223 102 K 102
               6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    
MSIFTKVLTE TDVNRKLSFP ENCVIPALQA FKAEVLLVKD DTGTLWRFVC AIRYGVSPKP  60
VIISGWIQFV QNKGLQEGDT VYFYREDDVI SGAHYKIEVR RKWNNDTNAN KILQAFGSPR  120
VAMGYPWNSE FC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-09B3 family protein