PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74372
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family SRS
Protein Properties Length: 223aa    MW: 24644.5 Da    PI: 8.6568
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74372genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021877e-58121474153
    DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas.skaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103
               g+++CqdCGnq+kkdC+++RCRtCC+s+gf+C+th+kstWvpa++rr+r+ q+ ++  +++     ++++kr r               ++ +s++ le+ 
  OMO74372  12 GGTRCQDCGNQSKKDCSYMRCRTCCRSKGFECQTHIKSTWVPAYRRRHRHPQQLSSVpQQQLLPLPHHNPKRLR---------------ENPSSPTGLEVG 97 
               7789*********************************************6555444302222222333333333...............344567789999 PP

    DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
               ++P+ev s+a frcvrvss+dd+++++aYqtav+igGhvfkGiLydqG+e
  OMO74372  98 DFPAEVTSPATFRCVRVSSIDDADDQYAYQTAVNIGGHVFKGILYDQGPE 147
               9***********************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MMMRQGGGGG FGGTRCQDCG NQSKKDCSYM RCRTCCRSKG FECQTHIKST WVPAYRRRHR  60
HPQQLSSVPQ QQLLPLPHHN PKRLRENPSS PTGLEVGDFP AEVTSPATFR CVRVSSIDDA  120
DDQYAYQTAV NIGGHVFKGI LYDQGPEGGG HHHHRSVGEC SSRETHQQQP NHHQFNVAAL  180
TTTATTTTNT SSVAAETLLP FPYASPFNAF MSAGTQFFLH PKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.19e-46SRS family protein