PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74380

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

DBB

Protein Properties

Length: 304aa MW: 33966.8 Da PI: 6.7117

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74380	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.6	5.9e-09	5	42	6	37
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++++e+++fC ++ lCe+C H+ H OMO74380 5 CDVCDKEEAIFFCSADEAALCESCDRRVHHAnklaskH 42 **************************997443666666 PP
2	zf-B_box	23.2	1.4e-07	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ ++e + lfC++++ lC++C l +H+ Ht OMO74380 54 ESPLCDICQERRGFLFCQEDRAILCRECDLPIHRAneHT 92 6789*****9*******************768865 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MKIWCDVCDK EEAIFFCSAD EAALCESCDR RVHHANKLAS KHSRFSLLHP TFKESPLCDI 60 CQERRGFLFC QEDRAILCRE CDLPIHRANE HTQKHNRFLL TGVKLSSSSS SSSPVLLNPT 120 SSSSNGYGAT VDSDQTTHNK SKSHSSKRFC SVSPSNDQNP YNLPCSTAAN YRVEDNNYTS 180 DTASISTSSI SEYLMETLPG WRVDDFLDPS NTANGFCKTI DEQVIKGGDF DCFSSEAIWV 240 PQVSYSPPSR SPQLLFFVPG NDLVNGFKVK ETNVLKFGCE RDDGSFLVPQ ISSSNSHKKS 300 RHFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	5e-56	DBB family protein

Link Out ? help Back to Top
Ensembl	OMO74380