PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74398
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family DBB
Protein Properties Length: 212aa    MW: 23174.1 Da    PI: 6.3837
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74398genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-07433534
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
               C+ +e   ++lfC  ++  lC++C ++ H
  OMO74398  4 LCDVCEGAAAILFCAADEAALCRSCDEKVH 33
              7******99******************998 PP
2zf-B_box28.53.2e-095291237
  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
              + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  OMO74398 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
              5799**************************9995544455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MRTLCDVCEG AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGR LEELGLQPLD  120
PNEVRKDQNQ QSKLAARENQ QNHRVSPVPV LDGNVDGDGK VGNKLIDLNA KPQRVHGQAS  180
TNQEQGMDVS SGNNHDSASV VPVGSFKREP EK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-87DBB family protein